- R-DeeP 2.0 is a database on RNA-dependent proteins in HeLa S3 and A549 cells resulting from the concept of RNA Dependence and its experimental conversion. R-DeeP 2.0 offers two search options, which can be accessed via the sidebar under Single search and Advanced search.
- The Single search option can be used to search the database for single proteins in HeLa S3 and A549 cells respectively. The button About the Format gives more details about the available input formats that can be used to search for a protein of interest.
- The Advanced search offers the possibility to search simultaneously for a list of proteins in both HeLa S3 and A549 cells. The result of the search indicates already for each protein whether data is available or not, and whether the protein is presenting an RNA-dependent shift or not.
- The search results can be downloaded depending on the content as CSV, PDF or HMTL files for archiving or further data processing and analysis.
- The References menu offers a selection of helpful links to proteins-related databases, protein-protein interactions databases, and RNA-binding-related databases and publications
- Information on how to cite and related publications and databases can be found under the About section from the sidebar menu.
- The sidebar is dynamic and can be removed by clicking on the list icon next to the R-Deep 2.0 logo at the top left corner of the screen.
A detailed and user-friendly documentation can be downloaded here:
